From 1d049afc456f55bd633f4a1f99810ca94225ffb0 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Wed, 8 Mar 2023 10:43:44 +0100 Subject: [PATCH] update csv for fastq.gz --- data/sample_mbelari.csv | 18 +++++++++--------- data/sample_mlongespiculosa.csv | 4 ++-- data/sample_mspiculigera.csv | 4 ++-- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/data/sample_mbelari.csv b/data/sample_mbelari.csv index 398a4b4..76e8c0c 100644 --- a/data/sample_mbelari.csv +++ b/data/sample_mbelari.csv @@ -1,9 +1,9 @@ -female1: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/1_S1_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/1_S1_L001_R2_001.fastq -female2: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/2_S2_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/2_S2_L001_R2_001.fastq -female3: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/3_S3_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/3_S3_L001_R2_001.fastq -female4: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/4_S4_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/4_S4_L001_R2_001.fastq -female5: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/5_S5_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/5_S5_L001_R2_001.fastq -female6: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/6_S6_L001_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/6_S6_L001_R2_001.fastq -female7: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/MRDR5_R1.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/MRDR5_R2.fastq -male1: //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/JU2817_males_S11_L002_R1_001.fastq ; //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/JU2817_males_S11_L002_R2_001.fastq -male2: //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/MRDR6_R1.fastq ; //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/MRDR6_R2.fastq +female1: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/1_S1_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/1_S1_L001_R2_001.fastq.gz +female2: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/2_S2_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/2_S2_L001_R2_001.fastq.gz +female3: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/3_S3_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/3_S3_L001_R2_001.fastq.gz +female4: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/4_S4_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/4_S4_L001_R2_001.fastq.gz +female5: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/5_S5_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/5_S5_L001_R2_001.fastq.gz +female6: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/6_S6_L001_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/6_S6_L001_R2_001.fastq.gz +female7: /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/MRDR5_R1.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mbelari_females/MRDR5_R2.fastq.gz +male1: //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/JU2817_males_S11_L002_R1_001.fastq.gz ; //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/JU2817_males_S11_L002_R2_001.fastq.gz +male2: //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/MRDR6_R1.fastq.gz ; //scratch/Bio/lmodolo/kmer_diff/data/Mbelari_males/MRDR6_R2.fastq.gz diff --git a/data/sample_mlongespiculosa.csv b/data/sample_mlongespiculosa.csv index 8217973..9c05514 100644 --- a/data/sample_mlongespiculosa.csv +++ b/data/sample_mlongespiculosa.csv @@ -1,2 +1,2 @@ -female1: /scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_females/MRDR3_R1.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_females/MRDR3_R2.fastq -male1: //scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_males/MRDR4_R1.fastq ; //scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_males/MRDR4_R1.fastq +female1: /scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_females/MRDR3_R1.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_females/MRDR3_R2.fastq.gz +male1: //scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_males/MRDR4_R1.fastq.gz ; //scratch/Bio/lmodolo/kmer_diff/data/Mlongespiculosa_males/MRDR4_R1.fastq.gz diff --git a/data/sample_mspiculigera.csv b/data/sample_mspiculigera.csv index d58b945..534ec50 100644 --- a/data/sample_mspiculigera.csv +++ b/data/sample_mspiculigera.csv @@ -1,2 +1,2 @@ -female1: /scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_females/AF72-females_BIS_S8_L002_R1_001.fastq ; /scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_females/AF72-females_BIS_S8_L002_R2_001.fastq -male1: //scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_males/AF72-males_S7_L002_R1_001.fastq ; //scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_males/AF72-males_S7_L002_R2_001.fastq +female1: /scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_females/AF72-females_BIS_S8_L002_R1_001.fastq.gz ; /scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_females/AF72-females_BIS_S8_L002_R2_001.fastq.gz +male1: //scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_males/AF72-males_S7_L002_R1_001.fastq.gz ; //scratch/Bio/lmodolo/kmer_diff/data/Mspiculigera_males/AF72-males_S7_L002_R2_001.fastq.gz -- GitLab