diff --git a/src/bin/kmerclust.R b/src/bin/kmerclust.R index 31507a1b09575b4694af37e5d6600b21e53ce0cf..786f1dd9f26590d8d584435eaeec4bc0adf98d82 100644 --- a/src/bin/kmerclust.R +++ b/src/bin/kmerclust.R @@ -2,6 +2,7 @@ library(kmerclust) library(ggplot2) args <- commandArgs(trailingOnly = TRUE) +print(args) data <- readr::read_tsv(args[2], show_col_types = FALSE) format(object.size(data), units = "Mb") diff --git a/src/modules/kmerclust.nf b/src/modules/kmerclust.nf index 9a9e51a52cad7483930e4fe4fbde54546b0d9339..31e0fa5b1408ed6d3b72a345186e6d2540862ffa 100644 --- a/src/modules/kmerclust.nf +++ b/src/modules/kmerclust.nf @@ -2,7 +2,7 @@ process KMERCLUST { tag "$specie" label 'big_mem_multi_cpus' - container "lbmc/kmerclust:0.0.1" + container "lbmc/kmerclust:0.0.2" publishDir "results/${params.kmer_size}/${specie}/", mode: 'copy' input: