Unverified Commit 3bbe96f6 authored by Laurent Modolo's avatar Laurent Modolo
Browse files

MUSIC: change read size param

parent cf94bb20
params.reads_size = 100
params.read_size = 100
params.frag_size = 200
params.step_l = 50
params.min_l = 200
......@@ -35,7 +35,7 @@ process compute_mappability {
script:
"""
generate_multimappability_signal.csh ${fasta} ${params.reads_size} ./
generate_multimappability_signal.csh ${fasta} ${params.read_size} ./
bash temp_map_reads.csh
bash temp_process_mapping.csh
"""
......@@ -98,7 +98,7 @@ MUSIC -get_per_win_p_vals_vs_FC -chip chip/ -control control/ \
-l_win_min ${params.min_l} -l_win_max ${params.max_l}
MUSIC -get_multiscale_punctate_ERs \
-chip chip/ -control control/ -mapp mappability/ \
-l_mapp ${params.reads_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0
-l_mapp ${params.read_size} -l_frag ${params.frag_size} -q_val 1 -l_p 0
ls -l
"""
}
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