diff --git a/src/Rnaseq.config b/src/Rnaseq.config new file mode 100644 index 0000000000000000000000000000000000000000..3aae4b2bba134c7537feca9499cd6a048dbe65b1 --- /dev/null +++ b/src/Rnaseq.config @@ -0,0 +1,26 @@ +profiles { + docker { + docker.temp = 'auto' + docker.enabled = true + process { + $adaptor_removal { + container = "cutadapt:1.14" + } + } + } + sge { + process{ + $adaptor_removal { + beforeScript = "module purge; module load cutadapt/1.14" + executor = "sge" + cpus = 1 + memory = "5GB" + time = "6h" + queueSize = 1000 + pollInterval = '60sec' + queue = 'h6-E5-2667v4deb128' + penv = 'openmp8' + } + } + } +} \ No newline at end of file