diff --git a/src/nf_modules/FastQC/fastqc.config b/src/nf_modules/FastQC/fastqc.config index e7b3280aee724da4fcb20dca1c2af4f433344d74..db3b0270190b5e736a709774713ac3115b5fa6ba 100644 --- a/src/nf_modules/FastQC/fastqc.config +++ b/src/nf_modules/FastQC/fastqc.config @@ -11,7 +11,14 @@ profiles { sge { process{ $fastqc { - beforeScript = "source /home/elabaron/.bashrc ; module load FastQC/0.11.5" + beforeScript = "module purge; module load FastQC/0.11.5" + executor = "sge" + cpus = 1 + memory = "5GB" + time = "6h" + queueSize = 1000 + pollInterval = '60sec' + queue = 'monointeldeb128' } } }