diff --git a/src/Rnaseq.config b/src/Rnaseq.config index 3aae4b2bba134c7537feca9499cd6a048dbe65b1..1ea9d3bd1a75158f4df72ea853620263d22c65f7 100644 --- a/src/Rnaseq.config +++ b/src/Rnaseq.config @@ -23,4 +23,31 @@ profiles { } } } -} \ No newline at end of file +} + +profiles { + docker { + docker.temp = 'auto' + docker.enabled = true + process { + $trimming { + container = "urqt:d62c1f8" + } + } + } + sge { + process{ + $trimming { + beforeScript = "module purge; module load UrQt/d62c1f8" + executor = "sge" + cpus = 4 + memory = "5GB" + time = "6h" + queueSize = 1000 + pollInterval = '60sec' + queue = 'h6-E5-2667v4deb128' + penv = 'openmp8' + } + } + } +}