From 18e2c4825cb4ea2994e3f392aeb07625a16f2091 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 23 Jul 2018 13:45:25 +0200
Subject: [PATCH] README.md: add list of tools

---
 README.md | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/README.md b/README.md
index 6f07ab7..d7871d5 100644
--- a/README.md
+++ b/README.md
@@ -76,6 +76,31 @@ for example to run the tests on `Bowtie2` run:
 src/nf_modules/Bowtie2/tests/tests.sh
 ```
 
+## Available tools
+
+- BEDtools nf: ok / docker: ok / sge: ok
+- Bowtie2 nf: ok / docker: ok / sge: ok
+- FastQC nf: no / docker: ok / sge: ok
+- HISAT2 nf: no / docker: ok / sge: ok
+- HTSeq nf: ok / docker: ok / sge: ok
+- Kallisto nf: ok / docker: ok / sge: ok
+- MultiQC nf: no / docker: ok / sge: ok
+- RSEM nf: ok / docker: ok / sge: ok
+- SAMtools nf: ok / docker: ok / sge: ok
+- SRAtoolkit nf: no / docker: ok / sge: ok
+- Salmon nf: no / docker: ok / sge: ok
+- TopHat nf: no / docker: ok / sge: ok
+- Trimmomatic nf: no / docker: ok / sge: ok
+- UrQt nf: ok / docker: ok / sge: ok
+- canu nf: ok / docker: ok / sge: ok
+- cutadapt nf: ok / docker: ok / sge: ok
+- deepTools nf: no / docker: ok / sge: ok
+- file_handle nf: no / docker: ok / sge: ok
+- pigz nf: no / docker: ok / sge: ok
+- sra-tools nf: ok / docker: no / sge: no
+
+
+
 ## Contributing
 
 Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.
-- 
GitLab