diff --git a/src/nf_modules/Kallisto/kallisto.nf b/src/nf_modules/Kallisto/kallisto.nf index aa923504626c25784fedd2c1123ab49f2c2d5a69..b158eeeffba1e1ec808df4277dd5980ee1e1467e 100644 --- a/src/nf_modules/Kallisto/kallisto.nf +++ b/src/nf_modules/Kallisto/kallisto.nf @@ -70,7 +70,7 @@ process mapping_fastq { mkdir ${reads[0].baseName} kallisto quant -i ${index} -t ${task.cpus} \ --bias --bootstrap-samples 100 -o ${reads[0].baseName} \ -${reads[0]} ${reads[1]} &> ${pair_id}_kallisto_report.txt +${reads[0]} ${reads[1]} &> ${reads[0].baseName}_kallisto_report.txt """ }