ChrSexebelari issueshttps://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari/-/issues2017-09-12T17:09:23+02:00https://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari/-/issues/4Issue #4 Search adapted variant caller2017-09-12T17:09:23+02:00cburnyIssue #4 Search adapted variant callerContinue bibliography especially focus on recent variant callers (see review from Sandman, 2017).Continue bibliography especially focus on recent variant callers (see review from Sandman, 2017).https://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari/-/issues/3Issue #3 Create an annotation file of repeated regions2017-09-12T17:08:44+02:00cburnyIssue #3 Create an annotation file of repeated regionsCreate a script to get annotation as a BED format of repeated regions associated to masked belari genomic area.Create a script to get annotation as a BED format of repeated regions associated to masked belari genomic area.cburnycburnyhttps://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari/-/issues/2Issue #2 Use bowtie2 to map against a reference containing contig and OP50 ge...2017-09-12T17:07:57+02:00cburnyIssue #2 Use bowtie2 to map against a reference containing contig and OP50 genomeMap processed data from both pools against one reference wich includes contigs and OP50 genome providing fragment size information parameters in bowtie2Map processed data from both pools against one reference wich includes contigs and OP50 genome providing fragment size information parameters in bowtie2mapping reads against contigcburnycburnyhttps://gitbio.ens-lyon.fr/LBMC/Delattre/ChrSexebelari/-/issues/1Issue #1 Check fragment size of reads2017-09-12T17:07:28+02:00cburnyIssue #1 Check fragment size of readsRun Kallisto on both processed male and female pools to get distribution of fragment size (need to look at the h5 to acccess the information)Run Kallisto on both processed male and female pools to get distribution of fragment size (need to look at the h5 to acccess the information)mapping reads against contigcburnycburny