From a270717e3f744e96cad3062b908ed832cabafe2c Mon Sep 17 00:00:00 2001
From: arnaud <Vous@exemple.com>
Date: Thu, 27 Aug 2020 11:27:40 +0200
Subject: [PATCH] add params by default

---
 src/chip_quant_analysis.nf | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/src/chip_quant_analysis.nf b/src/chip_quant_analysis.nf
index 97e872a8..b9e01413 100644
--- a/src/chip_quant_analysis.nf
+++ b/src/chip_quant_analysis.nf
@@ -74,14 +74,15 @@ params.skipFastqc = false
 params.skipMultiqc = false
 params.shortReads = false
 params.duplicate_removal = false
-params.inputFromPATH = false
 params.skipNorm_stats = false
 params.skipMapping_stats = false
-params.inputFromSRA="data/design/design_chip_quant.csv"
-params.fasta="/Xnfs/lbmcdb/common/Genomes/Schizosaccharomyces_pombe/2017_09_19_Schizosaccharomyces_pombe.ASM294v2.30.dna.genome.fasta.gz"
-params.fasta_calib="/Xnfs/lbmcdb/common/Genomes/Schizosaccharomyces_cerevisiae/S288C_reference_sequence_R64-2-1_20150113.fsa"
-params.macs_gsize = "1.25e7"
-params.outdir = 'results-chip_quant'
+
+params.inputFromPATH = false
+params.inputFromSRA= false
+params.fasta= false
+params.fasta_calib= false
+params.macs_gsize = false
+params.outdir = 'results'
 
 
 
-- 
GitLab