diff --git a/src/chip_quant_analysis.nf b/src/chip_quant_analysis.nf index 97e872a8160c22704068a8ce0c4dfb0800275dbd..b9e01413e3ac4acb2dc6a5c3e3520ae9d9173723 100644 --- a/src/chip_quant_analysis.nf +++ b/src/chip_quant_analysis.nf @@ -74,14 +74,15 @@ params.skipFastqc = false params.skipMultiqc = false params.shortReads = false params.duplicate_removal = false -params.inputFromPATH = false params.skipNorm_stats = false params.skipMapping_stats = false -params.inputFromSRA="data/design/design_chip_quant.csv" -params.fasta="/Xnfs/lbmcdb/common/Genomes/Schizosaccharomyces_pombe/2017_09_19_Schizosaccharomyces_pombe.ASM294v2.30.dna.genome.fasta.gz" -params.fasta_calib="/Xnfs/lbmcdb/common/Genomes/Schizosaccharomyces_cerevisiae/S288C_reference_sequence_R64-2-1_20150113.fsa" -params.macs_gsize = "1.25e7" -params.outdir = 'results-chip_quant' + +params.inputFromPATH = false +params.inputFromSRA= false +params.fasta= false +params.fasta_calib= false +params.macs_gsize = false +params.outdir = 'results'