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bam IO logic

  • 1. write a bam reader that can yield a pairs of reads in bam/sam format
  • 2. write a bam sampler that can output an array of pairs of reads size from the bam reader
  • 3. write a bam writer that can add pairs of reads in bam/sam format to a bam file
  • 4. write a function that write pairs of reads in SAM/BAM format into the right bam files depending on the size of the pair of reads using the read_bam, the write_bam function and the output of the classifier function
  • Work items 8
  • Merge requests 0
  • Participants 1
  • Labels 0
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8
Work items 8 New issue
Open: 2 Closed: 6
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Open: 0 Closed: 0 Merged: 0
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Reference: LBMC/Bernard/mnase_classifier%"bam IO logic"