From 99d159f6415d7b30448dfb00323abfa5289dc0e5 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 13 Mar 2023 10:47:43 +0100
Subject: [PATCH] add scaling param to readme

---
 README.md | 1 +
 1 file changed, 1 insertion(+)

diff --git a/README.md b/README.md
index f89db82..1ae564e 100644
--- a/README.md
+++ b/README.md
@@ -53,6 +53,7 @@ The `bamcalib` expect the following parameters:
 
 - `-c`, `--cal-prefix <cal_prefix>`    calibration prefix added to the chromosome name of the calibration genome (default: `calib_`)
 - `-h`, `--help`                       Print help information
+- `-s`, `--scaling <SCALING>`          multiply the OR by this value (must be the same across sample) [default: 1000]
 - `-n`, `--no_bits <no_bits>`          remove reads which bit code match this code. You can use [this site](https://broadinstitute.github.io/picard/explain-flags.html) to get an appropriate bit code. The default is `1540` for
   - segment unmapped
   - not passing quality controls
-- 
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